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Chapter1
1) Gaussian社のHP:https://gaussian.com/
Chapter2
2) Avogadro on rollApp:https://www.rollapp.com/app/avogadro
- Firefly:http://classic.chem.msu.su/gran/gamess/
- WinRAR:http://www.winrarjapan.com/download
- GAMESS(US):https://www.msg.chem.iastate.edu/gamess/
- MoCalc2012:https://sourceforge.net/projects/mocalc2012/
- Avogadro:https://avogadro.cc/
- MacMolPlt:https://brettbode.github.io/wxmacmolplt/downloads.html
- MaSK:http://ccmsi.us/mask/
- PlayOnMac:https://www.playonmac.com/en
Chapter3
3) A. K. Rappe, C. J. Casewit, K. S. Colwell, W. A. Goddard, W. M. Skiff, J Am. Chem. Soc. 114, 10024–10035, (1992), doi:10.1021/ja00051a040.
4) A. R. Hoy, P. R. Bunker, J. Molecular Spectroscopy, 74, 1-8, (1979), doi:10.1016/0022-2852(79)90019-5.
- XQuartz:https://www.xquartz.org/
- GAMESSQ :http://www.msg.chem.iastate.edu/GAMESS/GamessQ/
- JSmol:https://chemapps.stolaf.edu/jmol/jmol.htm
Chapter4
5) David C. Young. “Spin Contamination” http://www.ccl.net/cca/documents/dyoung/topics-orig/spin_cont.html, 20-FEB-2020.
6) 日本化学会編, “実験科学講座 12”第五版, 丸善 (2004).
7) 常田貴夫, “密度汎関数法の基礎”, 講談社 (2012).
8) QCLDBⅡ:http://qcldb2.ims.ac.jp/
- CCCBDB Timings Comparison:https://cccbdb.nist.gov/timings.asp
- Basis Set Exchange:https://www.basissetexchange.org
Chapter5.
- MolView:http://molview.org/
- GaussSum:http://gausssum.sourceforge.net/
- サクラエディタ:https://sakura-editor.github.io/
- mi:http://www.mimikaki.net/
Chapter6
9) J. B. Foresman, Æ. Frisch 著, 田崎健三 訳,”電子構造論による化学の探究” 第二版, Gaussian Inc., Pittsburgh (1998).
10) A. P. Scott, L. Radom, J. Phys. Chem. 100, 16502 (1996), doi:10.1021/jp960976r.
11) NIST Chemistry WebBook. https://webbook.nist.gov/chemistry/
12) CCCBDB. https://cccbdb.nist.gov/
13) https://webbook.nist.gov/cgi/cbook.cgi?ID=C98862, NIST, 20-FEB-2020.
- MolView:http://molview.org/
Chapter7
14) Firefly related discussion club. http://classic.chem.msu.su/gran/gamess/forum/discussion.html
15) GAMESS - Google Groups. https://groups.google.com/forum/#!forum/gamess
Chapter8
16) a) 福井謙一, “化学反応と電子の軌道”, 丸善 (1976).
b) 稲垣都士, 池田博隆, 山本尚, “フロンティア軌道論で理解する有機化学”, 化学同人 (2018).
17) I.Fleming, “Frontier Orbitals and Organic Reactions”, John Wiley (1976). [竹内敬人, 友田修司訳, “フロンティア軌道法入門”, 講談社 (1978).]
18) https://ja.wikipedia.org/wiki/有機電子論, Wikipedia, 20-FEB-2020.
19) 山口達明, “有機化学の理論 学生の質問に答えるノート”, 三共出版 (2013).
Chapter9
20) T. Kar, A. B. Sannigrahi, J. Mol. Struct. THEOCHEM. 165, 47-54 (1988), doi:10.1016/0166-1280(88)87005-2.
21) F. Martin, H. Zipse, J. Comp. Chem. 26, 97-105 (2005), doi:10.1002/jcc.20157.
22) A. E. Reed, R.B. Weinstock, F. Weinhold, J. Chem. Phys. 83, 735-746 (1985), doi:10.1063/1.449486.
23) J. D. Rawn, R. J. Ouellette, “Organic Chemistry: Structure, Mechanism, Synthesis” Academic Press (2018).
24) T. N. Sarachman, J. Chem. Phys. 49, 3146 (1968), doi:10.1063/1.1670562.
- NBO:https://nbo6.chem.wisc.edu/index.htm
- Jmol NBO Visualization Helper:http://www.marcelpatek.com/nbo/java-apps.php
Chapter10
25) Mark S. Gordon, Jan H. Jensen, Acc. Chem. Res. 29, 536 (1996), doi:10.1021/ar9600594.
26) N. R. Kestner, J. E. Combariza “Reviews in Computational Chemistry” 13, 99-132, (1999), doi:10.1002/9780470125908.ch2.
27) S. F. Boys, F. Bernardi, Mol. Phys. 19, 553 (1970), doi:10.1080/00268977000101561.
28) S. Simon, M. Duran, J. J. Dannenberg, J. Chem. Phys. 105, 11024 (1996), doi:10.1063/1.472902.
29) Thomas A. Halgren, J. Comp. Chem. 17, 490-519 (1996), doi:10.1002/(SICI)1096-987X(199604)17:5/6<490::AID-JCC1>3.0.CO;2-P.
30) K. Kitaura, K. Morokuma, Int. J. Quantum Chem. 10, 325 (1976), doi:10.1002/qua.560100211.
31) 都築誠二, “有機分子の分子間力: Ab initio 分子軌道法による分子間相互作用エネルギーの解析”, 東京大学出版会 (2015).
Chapter11
32) Jacopo Tomasi, Benedetta Mennucci, Roberto Cammi, Chem. Rev. 105, 2999-3094 (2005),
doi:10.1021/cr9904009.
33) S. Cabani, P. Gianni, V. Mollica, L. Lepori, J. Solution Chem. 10, 563 (1981), doi:10.1007/BF00646936.
Chapter12
34) 堀憲次, 山口徹. 化学反応遷移状態計算方法. 特許第4324680号. 2009-09-02.
- ChemTube3D:https://www.chemtube3d.com/
Chapter13
No footnotes.
Chapter14
35) C. Li, P. Ross, J. E. Szulejko, and T. B. McMahon, J. Am. Chem. Soc. 118, 9360 (1996), doi:10.1021/ja960565o.
- Apache OpenOffice:https://www.openoffice.org/ja/
- Mercury:http://www.ccdc.cam.ac.uk/mercury/
- Blender:https://www.blender.org/
- rxnlvl:https://github.com/eutactic/rxnlvl
- PyEnergyDiagrams:https://github.com/giacomomarchioro/PyEnergyDiagrams
Chapter15
36) W. J. Hehre, R. Ditchfield, L. Radom, J. A. Pople, J. Am. Chem. Soc. 92, 4796 (1970), doi:10.1021/ja00719a006.
37) S. E. Wheeler, K. N. Houk, P. v. R. Schleyer, W. D. Allen, J. Am. Chem. Soc. 131, 2547 (2009), doi:10.1021/ja805843n.
38) K. B. Wiberg, C. M. Hadad, P. R. Rablen, J. Cioslowski, J. Am. Chem. Soc. 114, 8644 (1992), doi:10.1021/ja00048a044.
39) 日本化学会編, “実験科学講座 12”第五版, 丸善 (2004).
40) Y. Zhao, D. G. Truhlar, Theor Chem Account 120, 215–241 (2008), doi:10.1007/s00214-007-0310-x.
41) Harold Booth, Jeremy R. Everett, J. Chem. Soc., Perkin Trans. 2, 255 (1980), doi:10.1039/P29800000255.
42) Alfred Karpfen, Cheol Ho Choi, Miklos Kertesz, J. Phys. Chem. A, 101, 7426 (1997),
doi:10.1021/jp971606l.
43) B. W. McCann, Stuart McFarl, Orlando Acevedo, J. Phys. Chem. A, 119, 8724 (2015),
doi:10.1021/acs.jpca.5b04116.
44) Johnson R. D. III: NIST Computational Chemistry Comparison and Benchmark Database, NIST Standard Reference Database Number 101 Release 20, August 2019, http://cccbdb.nist.gov/, 20-FEB-2020.
45) A. Granovsky. “Density Functional Theory”, http://classic.chem.msu.su/gran/gamess/DFT_and_DFT-D.pdf, 20-FEB-2020.
46) NIST. https://webbook.nist.gov/chemistry/
47) H. P. Ebrahimi, H. Shaghaghi, M. Tafazzoli, Concepts Magn Reson Part A, 38, 269 (2011), doi:10.1002/cmr.a.20227.
48) Kim K. Baldridge, Jay S. Siegel, J. Phys. Chem. A, 103, 4038 (1999), doi:10.1021/jp990523x.
49) J. R. Cheeseman, G. W. Trucks, T. A. Keith, M. J. Frisch, J. Chem. Phys. 104, 5497 (1996), doi:10.1063/1.471789.
50) SDBSWeb: https://sdbs.db.aist.go.jp, AIST, 20-FEB-2020.
51) J. A. N. F. Gomes, R. B. Mallion, Chem. Rev. 101 (5), 1349 (2001), doi:10.1021/cr990323h.
- CCCBDB (Reaction data):http://cccbdb.nist.gov/reactions.asp
- PubChemQC:http://pubchemqc.riken.jp/
- 7-Zip:https://sevenzip.osdn.jp/
- The Unarchiver:https://theunarchiver.com/
- Chemical Shift Repository:http://cheshirenmr.info
- nmrdb.org:http://www.nmrdb.org
- NMRShiftDBNMR:http://nmrshiftdb.nmr.uni-koeln.de/
Chapter16
52) David C. Young, “Computational Chemistry”, Wiley-Interscience (2001).
53) David C. Young, “Dave Young’s Chemical Topics”, http://www.ccl.net/cca/documents/dyoung/topics-orig/, 20-FEB-2020.
54) A. Granovsky, “Firefly 8.2.0 Full Manual”, Version 2016-09-15, pp. 72-73.
55) M. J. S. Dewar, E. G. Zoebisch, and E. F. Healy, J. Am. Chem. Soc. 107, 3902 (1985), doi:10.1021/ja00299a024.
56) J. J. P. Stewart, J. Comp. Chem. 10, 209, 211 (1989), doi:10.1002/jcc.540100208.
57) Stewart Computational Chemistry-MOPAC Home Page. http://openmopac.net/
- Chem Compute:https://chemcompute.org
- WebMO:https://www.webmo.net/
- WebMO Demo Server:https://www.webmo.net/demoserver/cgi-bin/webmo/login.cgi
- FiCo:http://classic.chem.msu.su/gran/gamess/
- JSmol:http://jmol.sourceforge.net/
- Jmol (SOURCEFORGE):https://sourceforge.net/projects/jmol/files/Jmol/
- GaussSum:http://gausssum.sourceforge.net/
- Open Babel:http://openbabel.org/wiki/Main_Page
- Gabedit:https://sites.google.com/site/allouchear/Home/gabedit/download
- Facio:http://zzzfelis.sakura.ne.jp/
- Winmostar:https://winmostar.com/jp/index.php
- OSRA:https://cactus.nci.nih.gov/osra/
- CCCBDB:https://cccbdb.nist.gov/
- Basis Set Exchange:https://www.basissetexchange.org/
- PubChemQC:http://pubchemqc.riken.jp/
- PCCDB:http://pccdb.org/
- QCLDBⅡ:http://qcldb2.ims.ac.jp/
- ChemTube3D:https://www.chemtube3d.com/
- CODATA:https://physics.nist.gov/cuu/Constants/index.html
- Computational Chemistry List (CCL):http://www.ccl.net/chemistry/index.shtml
- LICEcap:https://www.cockos.com/licecap/
- JSmol wiki (Borrowed JSmol):http://wiki.jmol.org/index.php/Borrowed_JSmol
- JSmol:https://chemapps.stolaf.edu/jmol/jmol.htm
- IDTFConverter:https://sourceforge.net/projects/u3d/
- PDF-XChange Editor:https://www.tracker-software.com/product/pdf-xchange-editor
- Basis Set Exchange:https://www.basissetexchange.org/
- MOPAC Downloads:http://openmopac.net/Downloads/Downloads.html
- MOPAC 7 SP:https://github.com/brhr-iwao/MOPAC7SP/releases
- WinMopac7.21:http://winmopac.narod.ru/english.html